Sourdough Lemon Poppyseed Muffins

Spring always pulls me straight into lemon season, and this recipe is one I keep coming back to. These Sourdough Lemon Poppyseed Muffins hit every mark. Bright, soft, and finished with a simple lemon drizzle that makes them feel extra. The crumb stays super tender, the lemon actually comes through, and the poppyseeds add that perfects bit of texture. So easy to mix up with a quick bake or long fermentation option, I hope you’ll love these as much as I do!
Why You’ll Love This Recipe
Bright lemon flavor: Fresh citrus gives these muffins the perfect sweet and tart balance without tasting artificial.
Ultra soft and tender crumb: these muffins bake up fluffy and moist with a melt-in-your-mouth texture.
Optional long fermentation: This batter is easy to mix and refrigerate for added benefits of fermentation while making the muffins extra soft.
Simple lemon drizzle: That final drizzle adds just the right pop of lemon and gives them that bakery feel.
Uses up discard beautifully: Need to use up discard? This is the perfect option.
Why Use Sourdough Starter in Muffins?
Using sourdough discard in muffins adds a slight tang, enhances moisture retention, and makes the crumb softer and more tender. The fermentation process also helps break down gluten, making these muffins easier to digest.
Do I have to long ferment these Muffins?
No! You can mix up this batter and bake immediately if you want muffins quickly. Just skip the fermentation step!
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Tools You’ll Need:
- Cooling rack– to cool muffins.
- Standard 12-cup muffin tin- for baking muffins. I love these pans from USA Bakeware linked here.
- Muffin liners- to avoid burned edges. I love these bakery style parchment muffin liners linked here.
- Digital kitchen scale (optional)– for accurate measuring, especially helpful with sourdough baking.
- Microplane or zester– for zesting lemon. I love this hand held zester linked here.
- 1/4 cup scoop – for scooping batter. I love this scoop for muffins linked here.
- Spatula- for combining ingredients.
- Mixing bowls- for mixing batter and glaze.
- Hand mixer or sturdy whisk- for mixing batter.

Gather Your Ingredients:
- Sourdough starter- (can use flat or past peak, can be cold or room temperature). Adds depth of flavor and moisture without making these muffins “sour”. Key for fermentation if you’re resting the batter overnight.
- Avocado Oil- Adds moisture and keeps the muffins soft and tender. You can substitute for any neutral cooking oil.
- Sour Cream– Adds moisture and acidity to balance sweetness and enhance tenderness of the crumb. You can also substitute for full-fat Greek yogurt.
- White sugar– Boosts sweetness and supports the rise and golden color.
- Whole Milk- you can use whole milk or substitute with buttermilk in the muffins.
- Honey- adds sweetness and moisture to the muffins. You can substitute this for agave or additional sugar.
- Vanilla extract– Enhances the flavor and brings warmth.
- Unsalted butter– Gives muffins moisture and that buttery depth of flavor.
- Eggs (room temperature)– provide structure and lift with moisture, works as a binder for ingredients.
- All-purpose flour- Gives the muffins structure while keeping it soft and cakey.
- Baking powder + Baking soda– Ensures the right rise and bakery-style domes for the muffins.
- Salt- Balances sweetness and enhances all the other flavors.
- Lemons- You’ll use both the lemon zest and the juice in the muffins and glaze to give them a bright citrus flavor.
- Poppyseeds- adds texture and crunch to these muffins and a mild nutty flavor. I love these organic poppyseeds linked here.
- Powdered Sugar- used to sweeten and thicken the lemon glaze.

Instructions
Step 1: Mix the Muffin Batter
In a large mixing bowl add the honey, white sugar, sourdough discard, sour cream, milk or buttermilk, vanilla extract, avocado oil, melted butter, eggs, lemon juice and lemon zest. Whisk ingredients together until blended.
In a separate bowl, whisk together the flour, baking powder, baking soda, poppyseeds and salt.
Add the dry ingredients to the wet, whisking together until no streaks remain. It’s important to not overmix the batter, as this will make the muffin tough.


Overnight Ferment Option: At this point you have the choice to ferment the batter overnight. If you choose to ferment, cover the bowl with plastic and transfer to the refrigerator overnight.
Step 2: Bake Muffins
Preheat your oven to 425°F (175°C).
Line a 12-cup muffin tin with parchment papers, and lightly spray with oil to avoid muffins sticking to the parchment.
Divide the batter evenly into the muffin cups, filling each muffin cup full. This is typically roughly 1/4 cup for a regular sized muffin. I like to fill the cup for that high rounded top!
Bake for 5 minutes at 425 F, then drop the heat to 350 F and bake 22-25 minutes, or until a toothpick inserted into the center comes out clean. Let the muffins cool in the pan for 5 minutes, then transfer them to a wire rack to cool completely before glazing.
Note about baking temperatures: Baking for 5 minutes at a higher heat gives muffins a more domed, bakery-style appearance. If you would like to skip this step, you can bake your muffins at 350 F for 25-28 minutes or until a toothpick comes out clean.
Step 3: Glaze the Muffins
In a microwave safe bowl, melt the butter for 15 seconds in the microwave.
Add the lemon juice, salt, vanilla extract or paste to the butter and whisk together.
Add the powdered sugar to the bowl, and whisk the glaze until it’s smooth. You want a glaze that’s thick but still runs off the spoon. If the glaze is too thin add a little more powdered sugar or if it’s too thick add a teaspoon at a time of milk until the glazed is your desired consistency.
Drizzle the glaze on the tops of the cooled muffins. Allow the glaze to set on the muffins for 10-20 minutes, then serve with a hot cup of coffee or tea!
Yields 12 large muffins or 16 regular muffins

How to Store:
Room Temperature– Store muffins in an airtight container on counter for up to 5 days.
Freezer– Freeze muffins in an airtight container for up to 3 months. Allow to thaw and gently reheat in oven or microwave to serve.
FAQ’S:
Absolutely. They’ll still be moist and flavorful baked right away, but fermentation deepens the flavor and improves rise.
No. You can leave them out or swap with chia seeds!
Because this recipe calls for the zest and the juice, fresh is best.
Drop a comment and leave a review if you loved this recipe and don’t forget to try more of my sourdough muffin recipes!
Sourdough Muffin Recipes to Try:
- Healthy Sourdough Banana Blueberry Muffins
- Sourdough Blueberry Lemon Crumble Muffins
- Sourdough Banana Crumble Muffins

Sourdough Lemon Poppyseed Muffins
Equipment
- Cooling rack – to cool muffins.
- Standard 12-cup muffin tin – for baking muffins. I love these pans from USA Bakeware linked here.
- Muffin liners – to avoid burned edges. I love these bakery style parchment muffin liners linked here.
- Digital kitchen scale (optional) – for accurate measuring, especially helpful with sourdough baking.
- Microplane or zester – for zesting lemon. I love this hand held zester linked here.
- 1/4 cup scoop – for scooping batter. I love this scoop for muffins linked here.
- Spatula – for combining ingredients.
- Mixing bowls – for mixing batter and glaze.
- Hand mixer or sturdy whisk – for mixing batter.
Ingredients
Wet Ingredients:
- 1/4 (85g) cup honey
- 3/4 (150g) cup granulated sugar
- 1/2 (120g) cup sourdough discard
- 1/2 (120g) cup sour cream or full-fat Greek yogurt
- 2/3 (165g) cup milk or buttermilk
- 2 large eggs
- 1/4 (57g) cup unsalted butter melted
- 1/4 (60g) cup avocado oil or neutral cooking oil
- 2 tsp vanilla extract
- 2 (8g) lemons zested
- 3 (50g) tbsp fresh lemon juice
Dry Ingredients:
- 3 (375g) cups all-purpose flour
- 2 1/2 tsp baking powder
- 1/4 tsp baking soda
- 3/4 tsp salt
- 2 1/2 (20g) tbsp poppy seeds
Lemon Glaze:
- 1 (100g) cup powdered sugar
- 1 1/2 (22g) tbsp fresh lemon juice
- 1 tsp unsalted butter melted
- 1/8 tsp vanilla extract
- 1/8 tsp sea salt
Instructions
Step 1: Mix the Muffin Batter
- In a large mixing bowl add the honey, white sugar, sourdough discard, sour cream, milk or buttermilk, vanilla extract, avocado oil, melted butter, eggs, lemon juice and lemon zest. Whisk ingredients together until blended.1/4 (85g) cup honey, 3/4 (150g) cup granulated sugar, 1/2 (120g) cup sourdough discard, 1/2 (120g) cup sour cream, 2/3 (165g) cup milk, 2 large eggs, 1/4 (57g) cup unsalted butter, 1/4 (60g) cup avocado oil, 2 tsp vanilla extract, 2 (8g) lemons, 3 (50g) tbsp fresh lemon juice
- In a separate bowl, whisk together the flour, baking powder, baking soda, poppyseeds and salt.3 (375g) cups all-purpose flour, 2 1/2 tsp baking powder, 1/4 tsp baking soda, 3/4 tsp salt, 2 1/2 (20g) tbsp poppy seeds
- Add the dry ingredients to the wet, whisking together until no streaks remain. It’s important to not overmix the batter, as this will make the muffin tough.
- Overnight Ferment Option: At this point you have the choice to ferment the batter overnight. If you choose to ferment, cover the bowl with plastic and transfer to the refrigerator overnight.
Step 2: Bake Muffins
- Preheat your oven to 425°F (175°C).
- Line a 12-cup muffin tin with parchment papers, and lightly spray with oil to avoid muffins sticking to the parchment.
- Divide the batter evenly into the muffin cups, filling each muffin cup full. This is typically roughly 1/4 cup for a regular sized muffin. I like to fill the cup for that high rounded top!
- Bake for 5 minutes at 425 F, then drop the heat to 350 F and bake 22-25 minutes, or until a toothpick inserted into the center comes out clean. Let the muffins cool in the pan for 5 minutes, then transfer them to a wire rack to cool completely before glazing.
- Note about baking temperatures: Baking for 5 minutes at a higher heat gives muffins a more domed, bakery-style appearance. If you would like to skip this step, you can bake your muffins at 350 F for 25-28 minutes or until a toothpick comes out clean.
Step 3: Glaze the Muffins
- In a microwave safe bowl, melt the butter for 15 seconds in the microwave.1 tsp unsalted butter
- Add the lemon juice, salt, vanilla extract or paste to the butter and whisk together.1 1/2 (22g) tbsp fresh lemon juice, 1/8 tsp vanilla extract, 1/8 tsp sea salt
- Add the powdered sugar to the bowl, and whisk the glaze until it’s smooth. You want a glaze that’s thick but still runs off the spoon. If the glaze is too thin add a little more powdered sugar or if it’s too thick add a teaspoon at a time of milk until the glazed is your desired consistency.1 (100g) cup powdered sugar
- Drizzle the glaze on the tops of the cooled muffins. Allow the glaze to set on the muffins for 10-20 minutes, then serve with a hot cup of coffee or tea!
- Yields 12 large muffins or 16 regular muffins

These are so fluffy!!! They are so bright and flavorful. Such a good muffin recipe!!
These muffins baked up so perfectly! Easy to make, and the lemon flavor came through just the way my family likes it! Tangy sweet and super fluffy. Thank you, Joselyn. Will be making these again soon!
I’m thrilled that this recipe was easy, and yielded a delightful outcome! So happy your family enjoyed these!
I made these exactly as written with long fermentation and THEY’RE THE BEST!! So soft, so flavorful, so wonderful. All the details in the recipe really matter and the results are just scrumptious! The lemon flavor comes through wonderfully. Thank you!!
Thank you so much for this review! It makes me so happy that you enjoyed this and loved the recipe, Holly!
Another fresh and light muffin that leaves you wanting more. Thank you for the meticulous details of this recipe that makes everyone successful!
I’m so happy this muffin is easy and your found the directions clear and easy!
This is just a gorgeous recipe and the flavor is outstanding. One of my favorites. The long fermentation is just the icing on the cake. Or muffin I guess
Love using this recipe and the fermentation benefits!
So glad you loved this recipe 🙂